survey - Analysis of Complex Survey Samples
Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase and multiphase subsampling designs. Graphics. PPS sampling without replacement. Small-area estimation. Dual-frame designs.
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cpp
13.97 score 1 stars 250 dependents 14k scripts 90k downloadsleaps - Regression Subset Selection
Regression subset selection, including exhaustive search.
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10.35 score 9 stars 177 dependents 5.5k scripts 86k downloadsmitools - Tools for Multiple Imputation of Missing Data
Tools to perform analyses and combine results from multiple-imputation datasets.
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10.33 score 3 stars 273 dependents 982 scripts 88k downloadssvyVGAM - Design-Based Inference in Vector Generalised Linear Models
Provides inference based on the survey package for the wide range of parametric models in the 'VGAM' package.
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7.10 score 7 stars 2 dependents 134 scripts 2.3k downloadsbiglm - Bounded Memory Linear and Generalized Linear Models
Regression for data too large to fit in memory.
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6.50 score 1 stars 28 dependents 408 scripts 23k downloadsrmeta - Meta-Analysis
Functions for simple fixed and random effects meta-analysis for two-sample comparisons and cumulative meta-analyses. Draws standard summary plots, funnel plots, and computes summaries and tests for association and heterogeneity.
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5.94 score 1 stars 23 dependents 282 scripts 4.4k downloadssvylme - Linear Mixed Models for Complex Survey Data
Linear mixed models for complex survey data, by pairwise composite likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>. Supports nested and crossed random effects, and correlated random effects as in genetic models. Allows for multistage sampling and for other designs where pairwise sampling probabilities are specified or can be calculated.
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5.46 score 35 stars 1 dependents 20 scripts 2.7k downloadshextri - Hexbin Plots with Triangles
Display hexagonally binned scatterplots for multi-class data, using coloured triangles to show class proportions.
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5.21 score 18 stars 18 scripts 343 downloadsrimu - Responses in Multiplex
Tools for manipulating, exploring, and visualising multiple-response data, including scored or ranked responses. Conversions to and from factors, lists, strings, matrices; reordering, lumping, flattening; set operations; tables; frequency and co-occurrence plots.
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4.89 score 4 stars 13 scripts 249 downloadsDHBins - Hexmaps for NZ District Health Boards
Draws stylized choropleth maps -- hexagonal maps and triangular multiclass hex maps -- for New Zealand District Health Boards and Regional Council areas. These allow faceted, coloured displays of quantitative information for comparison across District Health Boards or Regional Councils. The preprint Lumley (2019) <arXiv:1912.04435> is based on the methods in this package.
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4.52 score 3 stars 11 scripts 248 downloadsbigQF - Quadratic Forms in Large Matrices
A computationally-efficient leading-eigenvalue approximation to tail probabilities and quantiles of large quadratic forms, in particular for the Sequence Kernel Association Test (SKAT) used in genomics <doi:10.1002/gepi.22136>. Also provides stochastic singular value decomposition for dense or sparse matrices.
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4.33 score 6 stars 12 scripts 344 downloadsxkcdcolors - Color Names from the XKCD Color Survey
The XKCD color survey asked participants to name colours. Randall Munroe published the top thousand(roughly) names and their sRGB hex values. This package lets you use them.
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3.44 score 5 stars 11 scripts 241 downloads