survey - Analysis of Complex Survey Samples

Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase and multiphase subsampling designs. Graphics. PPS sampling without replacement. Small-area estimation. Dual-frame designs.

Last updated 5 months ago

cpp

13.94 score 1 stars 232 dependents 13k scripts 63k downloads

leaps - Regression Subset Selection

Regression subset selection, including exhaustive search.

Last updated 8 months ago

fortran

10.19 score 8 stars 169 dependents 4.5k scripts 84k downloads

mitools - Tools for Multiple Imputation of Missing Data

Tools to perform analyses and combine results from multiple-imputation datasets.

Last updated 6 years ago

9.38 score 1 stars 244 dependents 716 scripts 45k downloads

biglm - Bounded Memory Linear and Generalized Linear Models

Regression for data too large to fit in memory.

Last updated 8 months ago

fortran

6.36 score 1 stars 32 dependents 446 scripts 13k downloads

svyVGAM - Design-Based Inference in Vector Generalised Linear Models

Provides inference based on the survey package for the wide range of parametric models in the 'VGAM' package.

Last updated 2 years ago

6.01 score 6 stars 1 dependents 57 scripts 368 downloads

rmeta - Meta-Analysis

Functions for simple fixed and random effects meta-analysis for two-sample comparisons and cumulative meta-analyses. Draws standard summary plots, funnel plots, and computes summaries and tests for association and heterogeneity.

Last updated 7 years ago

5.51 score 1 stars 20 dependents 219 scripts 2.5k downloads

svylme - Linear Mixed Models for Complex Survey Data

Linear mixed models for complex survey data, by pairwise composite likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>. Supports nested and crossed random effects, and correlated random effects as in genetic models. Allows for multistage sampling and for other designs where pairwise sampling probabilities are specified or can be calculated.

Last updated 7 months ago

5.07 score 34 stars 18 scripts 1.3k downloads

hextri - Hexbin Plots with Triangles

Display hexagonally binned scatterplots for multi-class data, using coloured triangles to show class proportions.

Last updated 3 years ago

5.01 score 17 stars 12 scripts 220 downloads

rimu - Responses in Multiplex

Tools for manipulating, exploring, and visualising multiple-response data, including scored or ranked responses. Conversions to and from factors, lists, strings, matrices; reordering, lumping, flattening; set operations; tables; frequency and co-occurrence plots.

Last updated 11 months ago

4.78 score 4 stars 10 scripts 236 downloads

DHBins - Hexmaps for NZ District Health Boards

Draws stylized choropleth maps -- hexagonal maps and triangular multiclass hex maps -- for New Zealand District Health Boards and Regional Council areas. These allow faceted, coloured displays of quantitative information for comparison across District Health Boards or Regional Councils. The preprint Lumley (2019) <arXiv:1912.04435> is based on the methods in this package.

Last updated 3 years ago

4.59 score 3 stars 13 scripts 157 downloads

bigQF - Quadratic Forms in Large Matrices

A computationally-efficient leading-eigenvalue approximation to tail probabilities and quantiles of large quadratic forms, in particular for the Sequence Kernel Association Test (SKAT) used in genomics <doi:10.1002/gepi.22136>. Also provides stochastic singular value decomposition for dense or sparse matrices.

Last updated 3 years ago

4.30 score 6 stars 11 scripts 209 downloads

xkcdcolors - Color Names from the XKCD Color Survey

The XKCD color survey asked participants to name colours. Randall Munroe published the top thousand(roughly) names and their sRGB hex values. This package lets you use them.

Last updated 6 months ago

3.40 score 5 stars 6 scripts 123 downloads